Results in 2009
DNA Sequences
LOCUS CTX-M1 813 bp DNA linear BCT 05-FEB-2008
DEFINITION Escherichia coli strain SB3/1 beta-lactamase CTX-M1 gene, partial cds.
ACCESSION EU401703
VERSION EU401703.1 GI:166344060
KEYWORDS .
SOURCE Escherichia coli
ORGANISM Escherichia coli
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Escherichia.
REFERENCE 1 (bases 1 to 813)
AUTHORS Kmet,V.
TITLE First report of the calf Escherichia coli strain producing CTX-M1
in Slovakia
JOURNAL Unpublished
REFERENCE 2 (bases 1 to 813)
AUTHORS Kmet,V.
TITLE Direct Submission
JOURNAL Submitted (14-JAN-2008) Department of Molecular Diagnostics,
Institute of Animal Physiology, Slovak Academy of Sciences,
Soltesovej 4-6, Kosice 040 01, Slovak Republic
FEATURES Location/Qualifiers
source 1..813
/organism="Escherichia coli"
/mol_type="genomic DNA"
/strain="SB3/1"
/db_xref="taxon:562"
/note="ceftiofur and ceftriaxone-resistant strain"
CDS <1..>813
/codon_start=1
/transl_table=11
/product="beta-lactamase CTX-M1"
/protein_id="ABY86753.1"
/db_xref="GI:166344061"
/translation="LGSVPLYAQTADVQQKLAELERQSGGRLGVALINTADNSQILYR
ADERFAMCSTSKVMAVAAVLKKSESEPNLLNQRVEIKKSDLVNYNPIAEKHVDGTMSL
AELSAAALQYSDNVAMNKLISHVGGPASVTAFARQLGDETFRLDRTEPTLNTAIPGDP
RDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNTTGAASIQAGLPASWVVGDKT
GSGDYGTTNDIAVIWPKDRAPLILVTYFTQPQPKAESRRDVLASAAKIVTNGL"
ORIGIN
1 ttaggaagtg tgccgctgta tgcgcaaacg gcggacgtac agcaaaaact tgccgaatta
61 gagcggcagt cgggaggaag actgggtgtg gcattgatta acacagcaga taattcgcaa
121 atactttatc gtgctgatga gcgctttgcg atgtgcagca ccagtaaagt gatggccgtg
181 gccgcggtgc tgaagaaaag tgaaagcgaa ccgaatctgt taaatcagcg agttgagatc
241 aaaaaatctg acttggttaa ctataatccg attgcggaaa agcacgtcga tgggacgatg
301 tcactggctg agcttagcgc ggccgcgcta cagtacagcg ataacgtggc gatgaataag
361 ctgatttctc acgttggcgg cccggctagc gtcaccgcgt tcgcccgaca gctgggagac
421 gaaacgttcc gtctcgaccg taccgagccg acgttaaaca ccgccattcc gggcgatccg
481 cgtgatacca cttcacctcg ggcaatggcg caaactctgc gtaatctgac gctgggtaaa
541 gcattgggtg acagccaacg ggcgcagctg gtgacatgga tgaaaggcaa taccaccggt
601 gcagcgagca ttcaggctgg actgcctgct tcctgggttg tgggggataa aaccggcagc
661 ggtgactatg gcaccaccaa cgatatcgcg gtgatctggc caaaagatcg tgcgccgctg
721 attctggtca cttacttcac ccagcctcaa cctaaggcag aaagccgtcg cgatgtatta
781 gcgtcggcgg ctaaaatcgt caccaacggt ttg
Revision of DNA sequence from qnrS (2009) to qnrS1 (2010) in GenBank.
LOCUS GQ162867 334 bp DNA linear BCT 15-MAR-2010
DEFINITION Escherichia coli strain 63 QnrS1 protein (qnrS) gene, partial cds.
ACCESSION GQ162867
VERSION GQ162867
KEYWORDS .
SOURCE Escherichia coli
ORGANISM Escherichia coli
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Escherichia.
REFERENCE 1 (bases 1 to 334)
AUTHORS Kmet,V. and Kmetova,M.
TITLE High level of quinolone resistance in Escherichia coli from healthy
chicken broilers
JOURNAL Folia Microbiol. (Praha) 55, 79-82 (2010)
REFERENCE 2 (bases 1 to 334)
AUTHORS Kmet,V.
TITLE Direct Submission
JOURNAL Submitted (14-MAY-2009) Institute of Animal Physiology, Slovak
Academy of Sciences, Soltesovej 4-6, Kosice 040 01, Slovak Republic
FEATURES Location/Qualifiers
source 1..334
/organism="Escherichia coli"
/mol_type="genomic DNA"
/strain="63"
/isolation_source="poultry feces"
/db_xref="taxon:562"
/note="ciprofloxacin and enrofloxacin-resistant strain"
gene <1..>334
/gene="qnrS"
CDS <1..>334
/gene="qnrS"
/note="involved in quinolone resistance"
/codon_start=3
/transl_table=11
/product="QnrS1 protein"
/protein_id="ADD73550"
/translation="SFQQCQLAMANFSNANCYGIEFRACDLKGANFSRTNFAHQVSNR
MYFCSAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLSRGVFSEDVW
GQFSLQGA"
ORIGIN
1 caagtttcca acaatgccaa cttgcgatgg caaacttcag taatgccaat tgctacggta
61 tagagttccg tgcgtgtgat ttaaaaggtg ccaacttttc ccgaacaaac tttgcccatc
121 aagtgagtaa tcgtatgtac ttttgctcag catttatttc tggatgtaat ctttcctatg
181 ccaatatgga gagggtttgt ttagaaaaat gtgagttgtt tgaaaatcgc tggataggaa
241 cgaacctagc gggtgcatca ctgaaagagt cagacttaag tcgaggtgtt ttttccgaag
301 atgtctgggg gcaatttagc ctacagggtg ccaa
//