List of Lectures

List of plenary lectures

1. Role of DNA Repair in Antitumor Effects of Platinum Drugs. Biophysical Aspects
   ^a,bV. BRABEC
   ^a Institute of Biophysics, Academy of Sciences of the Czech Republic, Královopolská 135, CZ-61265 Brno, Czech Republic
   ^b Department of Biophysics, Faculty of Science, Palacký University, 17. listopadu 12, CZ-77146 Olomouc, Czech Republic
   
   
2. Collagen microfibril stabilizes and hydratizes under heating
   ^{a, b}S. G. GEVORKIAN, ^aA. E. Allahverdyan, ^b,cChin-Kun Hu, ^dA. L. Simonian, ^eD. S. Gevorgyan
   ^aYerevan Physics Institute, Yerevan, Armenia
   ^bInstitute of Physics, Academia Sinica, Taipei, Taiwan
   ^cCenter for Nonlinear and Complex Systems and Department of Physics, Chung Yuan Christian University, Chungli, Taiwan
   ^dMaterials Research and Education Center 275 Wilmore Auburn University, Auburn AL 36849-5341 USA
   ^eYerevan State Medical University, Yerevan, Armenia
   
   
3. Large Charged Macromolecule in the Entropic Trap
   ^aY. SH. MAMASAKHILISOV, ^bS. HAYRYAN and ^bC. K. HU
   ^aDepartment of Molecular Physics, Yerevan State University, 1 Al. Manougian str., Yerevan 375025, Armenia
   ^bInstitute of Physics, Academia Sinica, Nankang 11529, Taipei, Taiwan
   
   
4. Some recent developments in protein aggregation problems
   C.K. HU
   Institute of Physics, Academia Sinica, Taipei 11529, Taiwan
   
   
5. Desensitized states of nicotinic receptors – influence of mutations and pharmacology
   ^aJ. KRŮŠEK, ^aM. KANIAKOVÁ, ^aJ. LINDOVSKÝ, ^aL. SVOBODOVÁ ^abF. VYSKOČIL
   ^aInstitute of Physiology Academy of Sciences of the Czech Republic v.v.i. Prague,
   ^bDepartment of Animal Physiology, Faculty of Sciences Charles University, Prague
   
   
6. Enzymatic Conformational Transitions and Spectra of Photoproteins
   ^abN. KUDRYASHEVA, ^aN. BELOGUROVA, ^bR. ALIEVA
   ^aInstitute of Biophysics SB RAS, Krasnoyarsk, Russia
   ^bSiberian Federal University, Krasnoyarsk, Russia
   
   
7. ATP-dependent proteases and the mitochondrial nucleoid
   E. KUTEJOVÁ^a,b, V. PEVALA^a, G. ONDROVIČOVÁ^a, Ľ. AMBRO^a, and J. BAUER^{a
   a}Institute of Molecular Biology, Slovak Academy of Sciences, Dúbravská cesta 21, 845 51 Bratislava, Slovak Republic
   ^bInstitute of Microbiology, Academy of Sciences of the Czech Republic, Vídeňská 1083, CZ-142 20, Prague 4, Czech Republic
   
   


8. Fluorescence resonance energy transfer (FRET) and in situ proximity ligation assay (in situ PLA): a comparative study
   ^{a, b}M. M. MOCANU, ^aT. VÁRADI, ^aJ. SZÖLLŐSI, ^aP. NAGY
   ^aDepartment of Biophysics and Cell Biology, University of Debrecen, Nagyerdei krt 98, H-4012 Debrecen, Hungary
   ^bDepartment of Biophysics, “Carol Davila” University of Medicine and Pharmacy, Bd. Eroilor Sanitari 8, 050474 Bucharest, Romania
   
   
9. Generalized-Ensemble Algorithms for Protein Aggregation and Ligand Binding
   ^{a, b, c}Y. OKAMOTO
   ^aDepartment of Physics, Graduate School of Science, Nagoya University Nagoya, Aichi 464-8602, Japan
   ^bStructural Biology Research Center, Graduate School of Science, Nagoya University Nagoya, Aichi 464-8602, Japan
   ^cCenter for Comptational Science, Graduate School of Engineering Nagoya University, Nagoya, Aichi 464-8603, Japan
   
   
10. Manipulating protein interactions with multivalent ions: Aggregation, crystallization, and diffusion
    F. ZHANG, F. SCHREIBER
    Institute fuer Angewandte Physik, Universitaet Tuebingen, Auf der Morgenstelle10, 72076 Tuebingen, Germany
    
    
11. Protein evolution in a tube – ribosome display
    ^{a, b}E. SEDLÁK, ^aA. PLÜCKTHUN
    ^aDepartment of Biochemistry, University of Zürich, Switzerland
    ^bDepartment of Biochemistry, P. J. Šafárik University, Košice, Slovakia
    
    
12. Structural Principles of Substrate Specificity in GH30 Glucuronoxylanases
    ^aĽ. URBÁNIKOVÁ, ^bM. VRŠANSKÁ, ^cK. B. R. MORKEBERG KROGH, ^cT. HOFF and ^bP. BIELY
    ^aInstitute of Molecular Biology, SAS, Bratislava, Slovakia
    ^bInstitute of Chemistry, SAS, Bratislava, Slovakia
    ^cNovozymes, Bagsvaerd, Denmark
    
    
13. Global analysis of ion-pair dynamics in force-induced unfolding of titin kinase
    ^a,b,cM.-C. WU, ^dJ. G. FORBES, ^b,d,eK. WANG
    ^aResearch Center for Adaptive Data Analysis, National Central University, Chungli 32001, Taiwan
    ^bInstitute of Physics, Academia Sinica, Nankang, Taipei 11529, Taiwan
    ^cDepartment of Physics, National Central University, Chungli 32001, Taiwan
    ^dMuscle Proteomics and Nanotechnology Section, Laboratory of Muscle Biology, National Institute of Arthritis and Musculoskeletal and Skin Diseases, National Institutes of Health, Bethesda, Maryland 20892, USA
    ^eNanomedicine Program, and Institute of Biological Chemistry, Academia Sinica, Nankang, Taipei 11529, Taiwan
    
    
14. Classical and advanced methods of optical micromanipulations and their applications
    P. ZEMÁNEK
    Institute of Scientific Instruments of the ASCR, v.v.i., Academy of Sciences of the Czech Republic Královopolská 147, 612 64 Brno, Czech Republic
    


15. Effect of Spontaneous Hypertension on Heart and Kidney Mitochondria in Rats: Adaptation and Dysadaptation of Biochemical and Biophysical Properties, Influence of Captopril and Nifedipine
    ^aA. ZIEGELHÖFFER, ^aJ. MUJKOŠOVÁ, ^bO. ULIČNÁ, ^cI. WACZULÍKOVÁ, ^aM. FERKO, ^dB. ZIEGELHÖFFER, ^aT. RAVINGEROVÁ
    ^aInstitute for Heart Research, Centre of Excelence in Cardiovascular Research, SAS, Bratislava, SR
    ^bPharmacobiochemical Laboratory, IIIrd Medical Clinic, Faculty of Medicine, Comenius University, Bratislava, SR
    ^cDepartment of Nuclear Physics and Biophysics,Division of Biomedical Physics,Faculty of Mathematics,Physics & Informatics, Comenius University, Bratislava, SR
    ^dHeart Center Leipzig, University of Leipzig, Leipzig, Germany
    
    

List of short presentations

1. Human Lon protease: regulation of two distinct activities within one active site
   L. AMBRO, J. BAUER, G. ONDROVICOVA, V. PEVALA, E. KUTEJOVA
   Institute of Molecular Biology SAS, Bratislava
   
   
2. The structural variability and biological implication of G-quadruplex nucleic acids
   Ľ. BAUER, P. TÓTHOVÁ, K. TLUČKOVÁ, V. VÍGLASKÝ
   Department of biochemistry, Institute of Chemistry, Faculty of Science, P. J. Šafárik University, Košice, Slovakia
   
   
3. The study of human Ryanodine Receptor 2 N-terminal region responsible for heart disfunction
   ^{a, b}Ľ. BORKO, ^bV. BAUEROVÁ-HLINKOVÁ, ^bE. HOSTINOVÁ, ^bJ. GAŠPERÍK, ^cK. BECK, ^dA. ZÁHRADNÍKOVÁ, AND^b J. ŠEVČÍK
   ^aDepartment of Molecular Biology FNS Comenius University, Bratislava
   ^bInstitute of Molecular Biology SAS, Bratislava
   ^cCardiff University School of Dentistry, Cardiff, UK
   ^dInstitute of Molecular Physiology and Genetics SAS, Bratislava
   
   
4. The thermodynamics of tau protein regions involved in the microtubule binding, studied on the antibody-tau complexes by surface plasmon resonance
   ^aO. CEHLÁR, ^{a, b}R. SKRABANA, ^{a, b}M. NOVAK
   ^aInstitute of Neuroimmunology, Slovak Academy of Sciences, Dubravska cesta 9, 845 10 Bratislava, Slovakia
   ^bAxon Neuroscience GmbH, Rennweg 95/b, A-1030 Vienna, Austria
   
   
5. In silico, 3D Structure Prediction of aquaporin proteins homologues in Arapidobsis thaliana
   M. R. A. GAWWAD
   International University of Sarajevo, Hrasnička cesta 15, 71000 Sarajevo, Bosnia & Herzegovina
   
   
6. Reduction of insulin amyloid aggregates by albumin magnetic fluid
   K. SIPOSOVA, M. KUBOVCIKOVA, Z. BEDNARIKOVA, M. KONERACKA, V. ZAVISOVA, P. KOPCANSKY, Z. GAZOVA
   ^aDepartment of Biophysics, Department of Magnetism, Institute of Experimental Physics, Slovak Academy of Sciences, Watsonova 47, 040 01 Kosice, Slovakia
   ^bDepartment of Biochemistry, P. J. Safarik University, Moyzesova 11, 040 01 Kosice, Slovakia
   
   
7. Functional equivalence of as isolated and “high-energy” metastable states of the oxidized mitochondrial cytochrome c oxidase
   ^{a, d}D. JANCURA, ^bV. BERKA, ^{c, d}J. STANICOVA, ^dM. FABIAN
   ^aDepartment of Biophysics, Safarik University, Kosice, Slovakia,
   ^bDepartment of Internal Medicine, University of Texas Health Science Center, Houston, USA,
   ^cInstitute of Biophysics and Biomathematics, University of Veterinary medicine, Kosice, Slovakia,
   ^dDepartment of Biochemistry and Cell Biology, Rice University, Houston, USA
   
   
8. Walking of Antitumor Bifunctional Trinuclear PtII Complex on Double-Helical DNA
   ^a,bJ. KAŠPÁRKOVÁ, ^bJ. MALINA, ^cN. P. FARRELL, ^a,bV. BRABEC
   ^a Institute of Biophysics, Academy of Sciences of the Czech Republic, Královopolská 135, CZ-61265 Brno, Czech Republic
   ^b Department of Biophysics, Faculty of Science, Palacký University, 17. listopadu 12, CZ-77146 Olomouc, Czech Republic
   ^cDepartment of Chemistry, Virginia Commonwealth University, Richmond, Virginia, 23284-2006, USA
   
   
9. Accompanying Conformational Transition of Activation of Blood Coagulation Factor XIIII; A Molecular Modeling Study of the Initial Phase
   ^aI. KOMÁROMI, and ^{a, b}L. MUSZBEK
   ^aHaemostasis, Thrombosis and Vascular Biology Research Group of the Hungarian Academy of Sciences at the University of Debrecen, Debrecen, Hungary,
   ^bClinical Research Center, Medical and Health Science Center, University of Debrecen, Debrecen, Hungary
   
   
10. „I want Answers not Links“ – New ways to search the Internet
    A. KOS
    Owner of AKos GmbH and distributor for Accelrys software
    
    
11. Dihydropyridine Nimodipine is Blocker of Calcium, Potassium and Calcium-dependent Potassium Channels in Newborn Rat Hippocampal Neurons
    L. LACINOVA, B. TARABOVA, A. CARO
    Institute of Molecular Physiology and Genetics, SAS, Bratislava
    
    
12. Fibril Formation of Amyloid Peptides: from Lattice to All-Atom Simulations
    M. S. LI
    Institute of Physics, Polish Academy of Sciences, Al. Lotnikow 32/46, 02-668 Warsaw, Poland
    
    
13. Simulations of long α-helix self-assembly
    P. PALENČÁR, T. BLEHA
    Polymer Institute, Slovak Academy of Sciences, Bratislava,Slovakia
    
    
14. Structural- toxicity studies of Zn²⁺ -Aβ40 off-path quasi-spherical transient structures under physiological conditions
    ^aI. SOLOMONOV, ^bE. KORKOTIAN, ^aB. BORN, ^cD. KAGANOVICH, ^dY. FELDMAN, ^dA. BITLER, ^eF. RAHIMI, ^eH. LI, ^e,f,gG. BITAN, ^aI. SAGI
    ^aDepartments of Structural Biology and Biological Regulation, The Weizmann Institute of Science
    ^bDepartment of Neurobiology, The Weizmann Institute of Science
    ^cDepartment of Cell and Developmental Biology, Alexander Silberman Institute of Life Sciences, Hebrew University of Jerusalem 91904, Israel,
    ^dDepartment of Chemical Research Support, The Weizmann Institute of Science, Rehovot 76100, Israel
    ^eDepartment of Neurology, David Geffen School of Medicine,
    ^fBrain Research Institute, and
    ^gMolecular Biology Institute, University of California at Los Angeles, Los Angeles, CA 90095, USA.
    
    
15. The high ordered G-quadruplexes
    V. VÍGLASKÝ, Ľ. BAUER, K. TLUČKOVÁ, P. TÓTHOVÁ
    Department of Biochemistry, Institute of Chemistry, P.J.Šafárik University, Moyzesova 11, Košice, Slovakia